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USGS 2009 Fisheries and Aquatics Publications as of July 30

Alaska Science Center
Florida Integrated Science Center
Forest and Rangeland Ecosystem Science Center
Great Lakes Science Center
Leetown Science Center
National Wetlands Research Center
Southwest Biological Science Center
Upper Midwest Environmental Sciences Center
Western Ecological Research Center
Western Fisheries Research Center

Alaska Science Center

Hillgruber, N., and C.E. Zimmerman.  In press.  Estuarine ecology of juvenile salmon in western Alaska: a review.  Pages X – XX in C.C. Krueger and C.E. Zimmerman, editors.  Pacific Salmon: ecology and management of western Alaska’s populations.  American Fisheries Society, Symposium 70, Bethesda, Maryland.

Hobday, A., J. L. Nielsen, H. Arrizabalaga, N. Fragoso, M. Lutcavage and J. Sibert. 2009.   Proceedings Preface: Applications of electronic tagging to understanding marine animals.  In: Tagging and Tracking Marine Animals with Electronic Devices II. Reviews: Methods and Technologies in Fish Biology and Fisheries. Springer. Pp v-xvi.

Krueger, C.C., and C.E. Zimmerman, editors.  In press. Pacific Salmon: ecology and management of western Alaska’s populations.  American Fisheries Society, Symposium 70, Bethesda, Maryland.

Nielsen, J. L., A. Byrne, S. L. Graziano and C. C. Kozfay. 2009. Steelhead genetic diversity at multiple scales in a managed basin – Snake River, Idaho. North American Journal Fisheries Management 29:680-701.

  Nielsen, J.L., S. L. Graziano, and A. C. Seitz. 2009. Fine-scale population genetic structure in Alaskan Pacific halibut (Hippoglossus stenolepis).  Conservation Genetics Published on line: doi 10.1007/s10592-009-9943-8.

Nielsen, J. L. and S. A. Pavey. 2009. Perspectives: Gene expression in fisheries management. Special Issue Current Zoology. (in press).

Nielsen, J. L. and G. Ruggerone. 2009. Climate change and a dynamic ocean carrying capacity: Growth and survival of Pacific salmon at sea. In Pacific Salmon Environment and Life History Models: Advancing Science for Sustainable Salmon.  American Fisheries Society  Symposium 71 (in press).

Ruggerone, G. T. and J. L. Nielsen. 2009. A review of growth and survival of salmon at sea in response to competition and climate change. American Fisheries Society Symposium 70 (in press).

Ruggerone, G. T., J. L. Nielsen and B. A. Agler 2009. Linking marine and freshwater growth in western Alaska Chinook salmon, Oncorhynchus tshawytscha. Journal of Fish Biology (in press).

Ruggerone, G. T., J. L. Nielsen and B. A. Agler. 2009. Climate, growth and population dynamics of Yukon River Chinook salmon. NPAFC International Symposium on Bering-Aleutian Salmon International Surveys (BASIS): Climate Change, Production Trends, and Carrying Capacity of Pacific Salmon in the Bering Sea and Adjacent Waters. NPAFC Bulletin No. 5 (in press).

Zimmerman, C.E., G.W. Edwards, and K. Perry.  2009.  Maternal origin and migratory history of Oncorhynchus mykiss captured in rivers of the Central Valley, California.  Transactions of the American Fisheries Society.  138:280-291.

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Florida Integrated Science Center

Champagne, C.E., J.D. Austin, H.L. Jelks, and F. Jordan, 2008.  Effects of fin clipping on survival and position-holding behaviors of brown darters, Etheostoma edwini.  Copeia.  2008:  916-919.

Freeman, M.C., B.J. Freeman, N.M. Burkhead, and C.A. Straight.  2008.  A new species of Percina (Perciformes:  Percidae) from the Apalachicola River drainage, southeastern United States.  Zootaxa  1963:25-42.

Sulak, K.J., and M. Randall.  2009.  The gulf sturgeon in the Suwannee River—questions and answers:  U.S. Geological Survey General Information Product 72.  12 p.

Sulak, K.J., and Randall, Michael, 2008, Gulf sturgeon facts: U.S. Geological Survey General Information Product, 2 p.

Walsh, S.J., L. Knowles,  B.G. Katz, and D.A. Strom.  2009.  Hydrology, water quality, and aquatic communities of selected springs in the St. Johns River management district, Florida:  U.S. Geological Survey Scientific Investigations Report 2009-5046, 116 p.

Forest and Rangeland Ecosystem Science Center

Fausch, K.D., Rieman, B.E., Dunham, J.B., Young, M.K., Peterson, D.P., 2009, Invasion versus isolation- Trade-offs in managing native salmonids with barriers to upstream movement: Conservation Biology, v. 23, no. 4, p. 859-870.

Bisson, P.A., Dunham, J.B., Reeves, G.H., 2009, Freshwater ecosystems and resilience of Pacific salmon- Habitat management based on natural variability: Ecology and Society, v. 14, no. 1, p. online. 

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Great Lakes Science Center

Barbiero, Richard P., David B. Bunnell, David C. Rockwell, and Marc L. Tuchman. 2009. Recent increases in the large glacial-relict calanoid Limnocalanus macrurus in Lake Michigan. Journal of Great Lakes Research 35(2): 285-292.

Boscarino, Brent T., Lars G. Rudstam, June L. Eillenberger, Robert O’Gorman. 2009. Importance of light, temperature, zooplankton and fish in predicting the nighttime vertical distribution of Mysis diluviana. Aquatic Biology 5(3): 263-279.

Bunnell, David B., Solomon R. David, and Charles P. Madenjian. 2009. Decline in bloater fecundity in southern Lake Michigan after decline of Diporeia. Journal of Great Lakes Research 35(1): 45-49.

Bunnell, David B., Charles P. Madenjian, Jeffrey D. Holuszko, Jean V. Adams, and John R. P. French III. 2009. Expansion of Dreissena into offshore waters of Lake Michigan and potential impacts on fish populations. Journal of Great Lakes Research 35(1): 74-80.

Byappanahalli, Muruleedhara N., Richard Sawdey, Satoshi Ishii, Dawn A. Shively, John A. Ferguson, Richard L. Whitman, and Michael J. Sadowsky. 2009. Seasonal stability of Cladophora-associated Salmonella in Lake Michigan watersheds. Water Research 43(3): 806-814.

Byappanahalli, Muruleedhara N. and Richard L. Whitman. 2009. Clostridium botulinum type E occurs and grows in the alga Cladophora glomerata. Canadian Journal of Fisheries and Aquatic Sciences 66(6): 879-882.

Carl, Leon M. 2008. Lake trout demographics in relation to burbot and coregonine populations in the Algonquin Highlands, Ontario. Environmental Biology of Fishes 83(2): 127-138.

David, Katherine A., Bruce M. Davis, and R. Douglas Hunter. 2009. Lake St. Clair zooplankton: evidence for post-Dreissena changes. Journal of Freshwater Ecology 24(2): 199-209.

French, John R. P. III and M. Glen Black. 2009. Maximum length and age of round gobies (Apollonia melanostomus) in Lake Huron. Journal of Freshwater Ecology 24(1): 173-175.

French, John R. P. III,  Jeffrey S. Schaeffer, Edward F. Roseman, Courtney S. Kiley, and Alexandria Fouilleroux. 2009. Abundance and distribution of benthic macroinvertebrates in offshore soft sediments in western Lake Huron, 2001-2007. Journal of Great Lakes Research 35(1): 120-127.

Hebert, Craig E., D. V. Chip Weseloh, Abde Idrissi, Michael T. Arts, and Edward Roseman. 2009. Diets of aquatic birds reflect changes in the Lake Huron ecosystem. Aquatic Ecosystem Health and Management 12(1): 37-44.

Jensen, Olaf P., Peder M. Yurista, Thomas R. Hrabik, and Jason D. Stockwell. 2009. Densities and diel vertical migration of  Mysis relicta in Lake Superior: a comparison of optical plankton counter and net-based approaches. Verhandlungen Internationale Vereinigung für Theoretische und Angewandte Limnologie 30(6): 957-963.

Johnson, James H. 2008.  Diet composition and feeding periodicity of wild and hatchery subyearling chinook salmon in Lake Ontario. Journal of Great Lakes Research 34(4): 590-598.

Ketola, H. George, James H. Johnson, Connie M. Adams, and James F. Farquhar. 2009. Influence of  diet of double-crested cormorants on thiamine, lead, and mineral contents of their eggs. Journal of Freshwater Ecology 24(1): 39-43.

Ketola, H. George, Jacques Rinchard, Robert O'Gorman, Linda J. Begnoche, Daniel L. Bishop, and Andreas W. Greulich. 2009. Thiamin content of eggs and lengths of coho salmon (Oncorhynchus kisutch) in relation to abundance of alewife (Alosa pseudoharengus) in eastern Lake Ontario, 2003 to 2006. Journal of Freshwater Ecology 24(2): 247-254.

Kocovsky, Patrick M., Jean V. Adams, and Charles R. Bronte. 2009. The effect of sample size on the stability of principal components analysis of truss-based fish morphometrics. Transactions of the American Fisheries Society 138( 3): 487-496.

Kocovsky, Patrick M., Robert M. Ross, and David S. Dropkin. 2009. Prioritizing removal of dams for passage of diadromous fishes on a major river system. River Research and Applications 25(2): 107-117.

Kowalski, Kurt P., Douglas A. Wilcox, and Michael J. Wiley. 2009. Stimulating a Great Lakes coastal wetland seed bank using portable cofferdams:  implications for habitat rehabilitation. Journal of Great Lakes Research 35(2): 206-214.

Lantry, Brian F., Robert O'Gorman, and Leonard S. Machut. 2008. Maternal characteristics versus egg size and energy density: Do stocked lake trout in Lake Ontario experience premature reproductive senescence? Journal of Great Lakes Research 34(4): 661-674.

McGoldrick, Daryl J., Janice L. Metcalfe-Smith, Michael T. Arts, Donald W. Schloesser, Teresa J. Newton, Gerald L. Mackie, Emy M. Monroe , Johann Biberhofer, and Kennon Johnson. 2009. Characteristics of a refuge for native freshwater mussels (Bivalvia: Unionidae) in Lake St. Clair. Journal of Great Lakes Research 35(1): 137-146.

McKenna, James E. Jr., Bruce M. Davis, Mary C. Fabrizio, Jacqueline F. Savino, Thomas N. Todd, and Michael Bur. 2008. Ichthyoplankton assemblages of coastal west-central Lake Erie and associated habitat characteristics. Journal of Great Lakes Research 34(4): 755-769.

O'Gorman, R., S. E. Prindle, J. R. Lantry, and B. F. Lantry. 2008. Disruption of the lower food web in Lake Ontario: Did it affect alewife growth or condition? Aquatic Ecosystem Health & Management 11(4): 392-402.

Riley, Stephen C., Edward F. Roseman, S. Jerrine Nichols, Timothy P. O'Brien, Courtney S. Kiley, and Jeffrey S. Schaeffer. 2008. Deepwater demersal fish community collapse in Lake Huron. Transactions of the American Fisheries Society 137(6): 1879-1890.

Roseman, Edward F. and Stephen C. Riley. 2009. Biomass of deepwater demersal forage fishes in Lake Huron, 1994-2007: Implications for offshore predators. Aquatic Ecosystem Health & Management 12(1): 29-36.

Roseman, Edward F., Jeffrey S. Schaeffer, and Paul J. Steen. 2009. Review of fish diversity in Lake Huron basin. Aquatic Ecosystem Health & Management 12( 1): 11-22.

Rudstam, Lars G., Ted Schaner, Gideon Gal, Brent T. Boscarino, Robert O'Gorman, David M. Warner, Ora E. Johannsson, and Kelly L. Bowen. 2008. Hydroacoustic measures of Mysis relicta abundance and distribution in Lake Ontario. Aquatic Ecosystem Health & Management 11(4): 355-367.

Stapanian, Martin A., Patrick M. Kocovsky, and Jean V. Adams. 2009. Change in diel catchability of young-of-year yellow perch associated with establishment of dreissenid mussels. Freshwater Biology 54(8): 1593-1604.

Stewart, Thomas J., W. Gary Sprules, and Robert O’Gorman. 2009. Shifts in the diet of Lake Ontario alewife in response to ecosystem change. Journal of Great Lakes Research 35(2): 241-249.

Stockwell, Jason D., Mark P. Ebener, Jeff A. Black, Owen T. Gorman, Thomas R. Hrabik, Ronald E. Kinnunen, William P. Mattes, Jason K. Oyadomari, Stephen T. Schram, Donald R. Schreiner, Michael J. Seider, Shawn P. Sitar, and Daniel L. Yule. 2009. A synthesis of cisco recovery in Lake Superior: implications for native fish rehabilitation in the Laurentian Great Lakes. North American Journal of Fisheries Management 29(3): 626-652.

Tillitt, Donald E., Stephen C. Riley, Allison N. Evans, S. Jerrine Nichols, James L. Zajicek, Jacques Rinchard, Catherine A. Richter, Charles C. Krueger. 2009. Dreissenid mussels from the Great Lakes contain elevated thiaminase activity. Journal of Great Lakes Research 35(2): 309-312.

Walsh, Maureen G., Robert O'Gorman, Theodore Strang, William H. Edwards, and Lars G. Rudstam. 2008. Fall diets of alewife, rainbow smelt, and slimy sculpin in the profundal zone of southern Lake Ontario during 1994-2005 with an emphasis on occurrence of Mysis relicta. Aquatic Ecosystem Health and Management 11(4): 368-376.

Warner, David M., Randall M. Claramunt, John Janssen, David J. Jude, and Nigel Wattrus. 2009. Acoustic estimates of abundance and distribution of spawning lake trout on Sheboygan Reef in Lake Michigan. Journal of Great Lakes Research 35(1): 147-153.

Warner, David M., Courtney S. Kiley, Randall M. Claramunt, and David F Clapp. 2008. The influence of alewife year-class strength on prey selection and abundance of age-1 Chinook salmon in Lake Michigan. Transactions of the American Fisheries Society 137(6): 1683-1700.

Yule, D. L., J. D. Stockwell, D. R. Schreiner, L. M. Evrard, M. Balge, and T. R. Hrabik. 2009. Can pelagic forage fish and spawning cisco (Coregonus artedi) biomass in the western arm of Lake Superior be assessed with a single summer survey? Fisheries Research 96(1): 39-50.

Zhao, Yingming, Michael L. Jones, Brian J. Shuter, and Edward F. Roseman. 2009. A biophysical model of Lake Erie walleye (Sander vitreus) explains interannual variations in recruitment. Canadian Journal of Fisheries and Aquatic Sciences 66(1): 114-125.

Zweifel, R. D., R. Scott Hale, David B. Bunnell, and Mary T. Bremigan. 2009. Hatch timing variations among reservoir gizzard shad populations: implications for stocked Sander spp. fingerlings. North American Journal of Fisheries Management 29(2): 488-494.

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Leetown Science Center

Colt J, Watten B, Rust M. 2009. Modeling carbon dioxide, pH, and un-ionized ammonia relationships in serial reuse systems . Aquacultural Engineering 40(1):28-44.

Hanson L, Schrock R, Waddle T, Duda J, Lellis B. 2009. USGS River Ecosystems Modeling:  Where are we, how did we get here, and where are we going?  A report from the USGS river ecosystem modeling work group. Scientific Investgations Report 2009-5018:81 pages.

Holliday DK, Elskus AA, Roosenburg WM. 2009. Impacts of multiple stressors on growth and metabolic rate of Malaclemys terrapin. Environmental Toxicology and Chemistry 28(2):338-45.

Honeyfield, D.C., T. Kehler, J.W. Fletcher, and J.W. Mohler.  2008.  Effect of artificial sunlight on the retention of external calcein marks on lake trout.  North American Journal of Fisheries Management 28:1243–1248.

Honeyfield DC, Peters AK, Jones ML. 2008. Thiamine and fatty acid content of Lake Michigan chinook salmon. Journal of Great Lakes Research 34:581-9.

Honeyfield, D.C., D.E. Tillitt, and S.C. Riley.  2009.  Thiamine Deficiency Complex Workshop, November 6-7, 2008, Ann Arbor, Michigan.  Final Report.  27 pp.

Horton GE, Letcher BH, Bailey MM, Kinnison MT. 2009. Atlantic salmon (Salmo salar) smolt production:  the relative importance of survival and body growth. Canadian Journal of Fisheries and Aquatic Sciences 66(3):471-83.

Iwanowicz LR, Blazer VS, McCormick SD, VanVeld PA, Ottinger CA. 2009. Aroclor 1248 exposure leads to immunomodulation, decreased disease resistance and endocrine disruption in the brown bullhead, Ameiurus nebulosus. Aquatic Toxicology 93( 1):70-82.

Iwanowicz LR, Ottinger CA. 2009. Estrogens, estrogen receptors and their role as immunoregulators in fish [Pages 277-322 ]. in: Zaccone G, Meseguer J, Garcia-Ayala A, Kapoor BG, editors. Fish Defenses:  Volume 1:  Imunology. Enfield, New Hampshire: Science Publishers.

McCormick SD, Keyes A, Nislow KH, Monette MY. 2009. Impacts of episodic acidification on in-stream survival and physiological impairment of Altantic salmon (Salmo salar) smolts. Canadian Journal of Fisheries and Aquatic Sciences 66(3):394-403.

Redell LA, Gall WK, Ross RM, Dropkin DS. 2009. Biology of the Caddisfly Oligostomis ocelligera (Trichoptera: Phryganeidae) inhabiting acidic mine drainage in Pennsylvania. Northeastern Naturalist 16(2):285-306.

Smith DR, Mandt MT, MacDonald PDM. 2009. Proximate causes of sexual size dimorphism in horseshoe crabs (Limulus Polyphemus) of the Delaware Bay. Journal of Shellfish Research 28(2):405-17.

Wright G, Honeyfield DC, Faisal M. 2008. Fish Health. Special Publication Great Lakes Fishery Commission 08-02:59-64.

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National Wetlands Research Center

Herman, P., and Jenkins, J.A., 2009, DNA Analysis to Determine Sturgeon Species: Fish Lines Newsletter, U.S. Fish and Wildlife Service, vol. 7, no. 4, p. 7-8. < http://www.fws.gov/midwest/Fisheries/library/R3-Fishlines/FishLines-Vol7No4.pdf >

Jenkins, J.A., 2009, Reproductive Biomarkers in Spawning Yellow Perch (Perca flavescens) in Tributaries of the Chesapeake Bay (2008): U.S. Geological Survey Administrative Report, 18 p. [not for public distribution]

Jenkins, J.A., Bourgeois, E.B., and Jeske, C.W., 2008, Davis Pond Freshwater Prediversion Biomonitoring Study—Freshwater Fisheries and Eagles: U.S. Geological Survey Scientific Investigations Report 2008–5067, 102 p. < http://pubs.usgs.gov/sir/2008/5067/ > [posted January 8, 2009]

Jenkins, J.A., Goodbred, S.L., Sobiech, S.A., Olivier, H.M., Draugelis-Dale, R.O., and Alvarez, D.A., 2009, Effects of Wastewater Discharges on Endocrine and Reproductive Function of Western Mosquitofish (Gambusia spp.) and Implications for the Threatened Santa Ana Sucker (Catostomus santaanae): U.S. Geological Survey Open-File Report 2009-1097., 46 p. (Revised May 2009) < http://pubs.usgs.gov/of/2009/1097/ >

Keddy, P.A., Gough, L., Nyman, J.A., McFalls, T., Carter, J., and Siegrist, J., 2009, Alligator Hunters, Pelt Traders, and Runaway Consumption of Gulf Coast Marshes, p. 115-133 in Silliman, B.R., Grosholz, E.D., and Bertness, M.D., eds., Human Impacts on Salt Marshes: A Global Perspective: Berkeley, University of California Press, 413 p.

Lindquist, E.S., Krauss, K.W., Green, P.T., O’Dowd, D.J., Sherman, P.M., and Smith, T.J. III, 2009, Land Crabs as Key Drivers in Tropical Coastal Forest Recruitment: Biological Reviews, vol. 84, no. 2, p. 203-223. < http://www3.interscience.wiley.com/journal/121640896/abstract?CRETRY=1&SRETRY=0 >

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Patuxent Wildlife Research Center

Boon, P. J. and M. C. Freeman. 2009.  Methods for assessing the conservation value of rivers. Pp. 142-165 in: P. J. Boon and C. M. Pringle (editors), Assessing the Conservation Value of Fresh Waters: An International Perspective.  Cambridge University Press, Cambridge.

Converse, S. J., W. L. Kendall, P. F. Doherty, Jr., M. B. Naughton, and J. E. Hines. 2009. A traditional and less-invasive robust design: choices in optimizing effort allocation for seabird studies. Pages 727-744 in D. L. Thomson, E. G. Cooch, and M. C. Conroy, editors. Modeling demographic processes in marked populations, Springer Science+Business Media, New York, New York, USA.

Converse, S. J., W. L. Kendall, P. F. Doherty, Jr., and P. G. Ryan. 2009. Demography of Marion Island grey-headed albatross: analysis using advances in mark-recapture models.  The Auk 126:77-88.

Kendall, W. L., S. A. Converse, P. F. Doherty, Jr., M. Naughton, A. Anders, J. E. Hines and E. Flint. 2009. Design considerations in demographic studies of animal populations: a case of colonial seabirds. Ecological Applications 19:55-68.

Norman, J. R., M. M. Hagler, M. C. Freeman and B. J. Freeman. 2009. Application of a multistate model to estimate culvert effects on movement of small fishes.  Transactions of the American Fisheries Society 138: 826-838.

Southwest Biological Science Center

Andersen, M. Status and Trends of the Grand Canyon Population of Humpback Chub.  U.S. Geological Survey, Fact Sheet 2009-3035.

Coggins, Jr., L. G. and C. J. Walters. Abundance Trends and Status of the Little Colorado River Population of Humpback Chub: An Update Considering Data From 1989-2008.  U.S. Geological Survey, Open File Report 2009-1075.

Ralston, B. E., P. A. Davis, R. M. Weber, and J. M. Rundall. A Vegetation Database for the Colorado River Ecosystem from Glen Canyon Dam to the Western Boundary of Grand Canyon National Park, Arizona.  U.S. Geological Survey, Open File Report 2008-1216.

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Upper Midwest Environmental Sciences Center

Gray, B. R., D. Bushek, J. W. Drane, and D. Porter.  2009.  Associations between land use and Perkinsus marinus infection of eastern oysters in a high salinity, partially urbanized estuary.  Ecotoxicology 18:259–269.

Gutreuter, S., J. M. Vallazza and B.C. Knights. 2009. Lateral distribution of fishes in the main-channel trough of a large floodplain river: Implications for restoration. River. Res. Applic. Published online in Wiley InterScience (www.interscience.wiley.com) DOI: 10.1002/rra.1271

Jennings, C. A., and S. J. Zigler. In press. Biology and life history of paddlefish in North America: an update. In C. Paukert and G. Sholton (eds.), Paddlefish Management, Propagation, and Conservation in the 21st Century: Building From 20 Years of Research and Management. American Fisheries Society, Bethesda, MD; invited book chapter.

McGoldrick, D. J., J. L. Metcalfe-Smith, M. T. Arts, D. W. Schloesser, T. J. Newton, G. L. Mackie, E. M. Monroe, J. Biberhofer, and K. Johnson. 2009. Characteristics of a refuge for native freshwater mussels (Bivalvia: Unionidae) in Lake St. Clair. Journal of Great Lakes Research 35:137-146, 2009.

Rach, J.J, M.A. Boogaard, and C.S. Kolar.  2009.  Toxicity of rotenone and antimycin to silver carp and bighead carp.  North American Journal of Fisheries Management 29:388-395.

Woolnough, D. A., J. A. Downing, and T. J. Newton. 2009. Fish movement and habitat use depends on water body size and shape.  Ecology of Freshwater Fish 18: 83–91.

Western Ecological Research Center

Madej, M.A., and Ozaki, V., 2009, Persistence of effects of high sediment loading in a salmon-bearing river, northern California, in James, L.A., Rathburn, S.L., and Whittecar, G.R., eds., Management and Restoration of Fluvial Systems with Broad Historical Changes and Human Impacts: Geological Society of America Special Paper 451, p. 43–55, Boulder, CO. doi: 10.1130/2008.2451(03).

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Western Fisheries Research Center

Anderson, G.O., A.X. Wilkens, S.B. Burdick, and S.P. VanderKooi. 2009. Seasonal distribution and abundance of larval and juvenile Lost River and shortnose suckers in Hanks Marsh, Upper Klamath National Wildlife Refuge, Upper Klamath Lake, Oregon: 2007 Annual Report: U.S. Geological Survey Open-File Report 2009-1014, 36 p.

Barry, P.M., E.C. Janney, D.A. Hewitt, B.S. Hayes, and A.C. Scott. 2009. Population dynamics of adult Lost River (Deltistes luxatus)and shortnose (Chasmistes brevirostris) suckers in Clear Lake Reservoir, California, 2006-08: U.S. Geological Survey Open-File Report 2009-1109,18 p. URL released May 21, 2009. http://pubs.usgs.gov/of/2009/1109/.

Beeman, J.W., A.C. Braatz, S.D. Fielding, H.C. Hansel, S.T. Brown, G.T. George, P.V. Haner, G.S. Hansen, and D.J. Shurtleff. 2009.  Passage, Survival, and Approach Patterns of Juvenile Salmonids at Little Goose Dam, U.S. Army Corps of Engineers Anadromous Fish Evaluation Report 2007 W68SBV60317747.

Beeman, J., S. Juhnke, G. Stutzer, and N. Hetrick.  2009.  Survival and Migration Behavior of Juvenile Coho Salmon in the Klamath River Relative to Discharge at Iron Gate Dam, Northern California 2007.  USGS OFR 2008-1332.

Beeman, J.W., S. Juhnke, and H.C. Hansel. 2009, Summary of survival data from juvenile coho salmon in the Klamath River, northern California, 2008: U.S. Geological Survey Open-File Report 2009-1019, 6 p. URL released February 4, 2009. http://pubs.usgs.gov/of/2009/1019/.

Beeman, J.W., H. Hansel, and S. Juhnke. 2009. Summary of survival data from juvenile coho salmon in the Trinity River, northern California, 2008: U.S. Geological Survey Open-File Report 2009-1092, 26 p. URL released May 12, 2009. http://pubs.usgs.gov/of/2009/1092/.

Burdick, S.M., S.P. VanderKooi, and G.O. Anderson. 2009. Spring and summer spatial distribution of endangered juvenile Lost River and shortnose suckers in relation to environmental variables in Upper Klamath Lake, Oregon—2007 Annual Report: U.S. Geological Survey Open-File Report 2009-1043, 56 p. URL released March 10, 2009. http://pubs.usgs.gov/of/2009/1043/.

Elliott, D.G., C.M. Conway and L.J. Applegate .2009. Evaluation of fast green FCF dye for non-lethal detection of integumental injuries in juvenile Chinook salmon (Oncorhynchus tshawytscha). Dis. Aquat. Org. 84:139-150.

Ellsworth, C.M., T.J. Tyler, S.P. VanderKooi, and D.F. Markle. 2009. Patterns of larval sucker emigration from the Sprague and lower Williamson Rivers of the Upper Klamath Basin, Oregon, prior to the removal of Chiloquin Dam: U.S. Geological Survey Open-File Report 2009-1027, 32 p. URL released February 12, 2009. http://pubs.usgs.gov/of/2009/1027/.

Gadomski, D.M., and P.G. Wagner.  2009.  Factors affecting the age-0 resident fish community along shorelines of the Hanford Reach of the Columbia River.  Northwest Science.  83:180-188.

Hershberger, P.K., N.E. Elder, C.A. Grady, J.L. Gregg, C.A. Pacheco, C. Greene, C. Rice and T.R. Meyers (2009) Prevalence of viral erythrocytic necrosis in Pacific herring and epizootics in Skagit Bay, Puget Sound, Washington. J. Aquat. Anim. Health 21:1-7.

Kent, M.L., S.W. Feist, C. Harper, S. Hoogstraten-Miller, J. MacLaw, J.M. Sanchez-Morgado, R.L. Tanguay, G.E. Sanders, J.M. Spitsbergen and C.M. Whipps. 2009. Recommendations for control of pathogens and infectious diseases in fish rearing facilities. Comp. Biochem. Physiol.  Part C. 149:240-248.

Lind-Null, A., and K. Larsen. 2009. Pre-restoration habitat use by Chinook Salmon in the Nisqually Estuary using otolith analysis—An additional year: U.S. Geological Survey Open-File Report 2009-1106, 18 p. URL released May 19, 2009. http://pubs.usgs.gov/of/2009/1106/.

May, T.W., M.J. Walther, M.K. Saiki, and W.G. Brumbaugh. 2009.  Total selenium and selenium species in irrigation drain inflows to the Salton Sea, California, April and July 2008:  U.S. Geological Survey Open-File Report 2009-1011, 17 p.

Parsley, M.J.  2009. Detections of acoustic-tagged green sturgeon in Baker Bay on the lower Columbia River during September-November 2008: U.S. Geological Survey Open-File Report 2009-1026, 10 p. URL released February 11, 2009. http://pubs.usgs.gov/of/2009/1026/.

Puls, A.L., T.D. Counihan, C.E. Walker, J.M. Hardiman, and I.N. Duran.  2009.  Survival and Migration Behavior of Subyearling Chinook Salmon at Lower Granite Dam, U.S. Army Corps of Engineers Anadromous Fish Evaluation Report 2007 W68SBV70198655.

Purcell, M.K., K.J. Laing, J.C. Woodson, G.H. Thorgaard and J.D. Hansen.  2009. Characterization of the interferon genes in homozygous rainbow trout reveals two novel genes, alternate splicing and differential regulation of duplicated genes. Fish Shellfish Immunol. 26:293-304.

Purcell, M.K., K.A. Garver, C. Conway, D.G. Elliott and G. Kurath.  2009. Infectious hematopoietic necrosis virus genogroup-specific virulence mechanisms in sockeye salmon, Oncorhynchus nerka (Walbaum), from Redfish Lake Idaho. J. Fish Dis. 32:619-631.

Robinson, T.C., P.W. Sorensen, J.M. Bayer, and J.G. Seelye.  2009.  Olfactory Sensitivity of Pacific Lampreys to lamprey Bile Acids.  Trans. Am. Fish. Soc. 138:144-152. DOI:10.1577/T07-233.1.

Rose, B.P., and Mesa, M.G. 2009. Bull trout forage investigations in Beulah Reservoir, Oregon—Annual Report for 2006: U.S. Geological Survey Open-File Report 2009-1036, 38 p. URL released February 23, 2009. http://pubs.usgs.gov/of/2009/1036/.

Rose, B.P., and M.G. Mesa. 2009. Minimum pool and bull trout prey base investigations at Beulah Reservoir—Final report 2008: U.S. Geological Survey Open-File Report 2009–1068, 54 p. URL released April 16, 2009. http://pubs.usgs.gov/of/2009/1068/.

True, K., M.K. Purcell and J.S. Foott.  2009. Development and validation of a quantitative PCR to detect Parvicapsula minibicornis and comparison to histologically ranked infection of juvenile Chinook salmon (Oncorhynchus tshawytscha Walbaum) from the Klamath River, USA. J. Fish Dis. 32:183-192.

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